Wild Fermented Tomato Salsa

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This vibrant salsa showcases firm tomatoes, sweet red peppers, jalapenos, and plenty of garlic, blended and mixed to a chunky finish and then allowed to ferment naturally. Sea salt and cumin add savor, while fermentation delivers a bright tang. Pack the salsa into jars, let it ferment until bubbly and to your liking, then enjoy a refreshing condiment for tacos, eggs, or as a dip. The fermentation enriches both the flavor and the texture, enhancing freshness and adding complexity. Adjust the batch’s heat or tanginess by varying fermentation time or peppers.

sana kitchen chef
Updated on Mon, 02 Jun 2025 13:09:48 GMT
A jar of salsa with green toppings. Pin it
A jar of salsa with green toppings. | recipebyme.com

Wild fermented salsa is my go-to for bringing a punch of bright flavor to tables any time of year. Having learned the basics from a family friend who swore by fermenting her backyard tomatoes, I’ve tweaked this recipe until every spoonful is zesty, fresh, and alive with tang. The fermentation brings a unique depth you will never get from store-bought versions and it is a rewarding kitchen project, too.

I first started making wild fermented salsa after my neighbor shared a jar from her harvest. Once I saw how easy and vibrant it was, I started a summer ritual and now my friends ask for a jar every year.

Ingredients

  • Tomatoes: Choose a firm and less juicy variety like San Marzano for best texture and minimal watery salsa
  • Red onion: Lends sweetness and bite Use medium to large onions with vibrant color
  • Sweet red peppers: Give body and sweetness to balance the tomatoes Look for shiny skin and avoid soft spots
  • Jalapenos: Provide that classic heat Adjust the amount for spice Add more if you love it fiery
  • Garlic cloves: Build deep flavor Fresh and plump cloves are best
  • Chopped cilantro: Adds herbal brightness Use leafy tops with tender stems
  • Sea salt: Fermentation starter providing necessary microbes Use pure sea salt without added iodine
  • Ground cumin: Infuses slight earthiness Use freshly ground if possible for aroma

Step-by-Step Instructions

Prep and Dice Tomatoes:
Remove and discard the ends of the tomatoes where the stems attach Cut each tomato and collect the juice and seeds in a bowl to minimize mess Carefully dice tomatoes into uniform pieces so the salsa base is chunky but not mushy
Prepare Onions and Combine:
Dice half to two thirds of the red onions Add diced onions to the tomatoes in a large bowl Save the rest for blending and consider the flavor balance between chunky and blended onions
Prep Peppers and Aromatics:
Remove stems and all seeds from the sweet peppers and jalapenos Slice them into pieces to ease blending Peel garlic cloves and roughly chop quarters of remaining onions Place these with the reserved tomato juice from earlier into a food processor
Blend the Saucy Base:
Pulse the food processor ingredients until mostly uniform small bits form The mixture should look like a thick sauce with little chunks not completely smooth
Mix Everything Together:
Pour the blended mixture into the large bowl with tomatoes and onions Add chopped cilantro sea salt and ground cumin Mix thoroughly so salt distributes into every corner of the salsa
Pack into Jars:
Scoop salsa into clean glass jars Push down with a spoon or fork after every few scoops to release trapped air and ensure all vegetables are submerged in the juice Fill to about one inch from the top for proper headspace Seal the jars loosely to let gas escape as it ferments
Ferment the Salsa:
Place jars in a cool dark spot away from heat Ferment for three to five days depending on your taste for tang and your room temperature Look for bubbles forming in about three days which mean healthy fermentation Each day press down any floating veggies with a fork to keep everything submerged Taste daily Move jars to cold storage when the salsa is tangy as you like
A jar of salsa with a red pepper in it. Pin it
A jar of salsa with a red pepper in it. | recipebyme.com

This recipe makes me think of those summer afternoons when my daughter and I would taste the salsa every morning during its tangy transformation The scent of garlic and cilantro tangling with tomato introduced her to classic kitchen magic Salsa night has become our special celebration

Storage Tips

Store wild fermented salsa in the refrigerator once it achieves your preferred tang. A well-sealed jar lasts up to one month cold. Always use a clean spoon to scoop salsa and never double dip to maintain freshness and prevent spoilage. If any surface mold forms just remove the top layer cleanly the salsa underneath is usually fine since the brine protects the vegetables.

Ingredient Substitutions

If tomatoes are out of season feel free to substitute with fire roasted canned tomatoes for a smoky twist. Bell peppers can step in for sweet red peppers but watch for additional water content. Those preferring less spice can swap jalapeno for Anaheim or poblano chilies. For a savory lift a pinch of smoked paprika brings a barbecue flavor if cumin is not on hand.

Serving Suggestions

Serve this vibrant salsa with classic tortilla chips at any party Stir into cooked grains like quinoa or rice for a Mexican inspired bowl. Top grilled corn or tacos for instant brightness. My favorite use is spooning a little onto avocado toast or mixing into scrambled eggs for an instant flavor boost at breakfast.

Cultural Historical Context

Wild fermentation of vegetables started as a simple preservation method before refrigeration. Mexican salsas have always celebrated fresh seasonal produce but this lacto fermented style draws on old world preservation combined with local chili and tomato culture. Today wild fermented salsa bridges culinary tradition and gut health in every spoonful.

A bowl of salsa with avocado and tomatoes. Pin it
A bowl of salsa with avocado and tomatoes. | recipebyme.com

This wild fermented salsa is a celebration of summer flavors in every bite, blending heritage with healthful simplicity.

Frequently Asked Questions

→ How do I prevent the salsa from becoming too watery?

Select firm, less juicy tomatoes, and reserve excess juice during dicing. Only add enough liquid to maintain a chunky, spoonable texture.

→ How can I tell when fermentation is complete?

Look for air bubbles forming around day 3, a tangy aroma, and taste daily until desired acidity is achieved. Move to cold storage once ready.

→ Can I adjust the heat level?

Yes, increase or reduce the number of jalapenos, and remove or retain seeds based on your spice preference.

→ Is it safe to ferment salsa at room temperature?

Yes, as long as vegetables remain submerged, jars aren’t sealed airtight, and the kitchen is clean. Discard if you notice mold or off-odors.

→ What foods pair well with this tangy salsa?

Enjoy with grilled meats, tacos, scrambled eggs, tortilla chips, or as a topping for roasted vegetables and grain bowls.

Wild Fermented Tomato Salsa

Lively salsa bursting with tomatoes, peppers, and fresh cilantro, tangy from natural fermentation.

Prep Time
35 Minutes
Cook Time
~
Total Time
35 Minutes
By: Sana

Category: Dips & Spreads

Difficulty: Intermediate

Cuisine: Mexican

Yield: 10 Servings (3–4 litres of salsa)

Dietary: Vegan, Vegetarian, Gluten-Free, Dairy-Free

Ingredients

→ Produce

01 2.7 kg firm tomatoes (preferably San Marzano variety), ends removed, diced, juices and seeds reserved
02 450 g red onion, divided, half diced and half reserved for blending
03 450 g sweet red peppers, seeds and stems discarded
04 4 jalapeños, seeds and stems discarded
05 12 garlic cloves, peeled
06 2 cups (approximately 60 g) fresh cilantro, finely chopped

→ Seasonings

07 4 tablespoons sea salt
08 1 teaspoon ground cumin

Instructions

Step 01

Remove and discard the stem ends from the tomatoes. Reserve the juice and seeds in a separate bowl to minimize waste and mess. Dice the tomatoes and place them in a large mixing bowl.

Step 02

Dice half of the red onions and add them to the tomatoes in the bowl. Reserve the remaining onions for processing with the peppers and garlic.

Step 03

In a food processor, combine the remaining red onions, sweet red peppers, jalapeños, garlic cloves, and the reserved tomato juice and seeds. Pulse until the mixture is well mixed but retains a chunky texture, not completely smooth.

Step 04

Add the processed mixture, chopped cilantro, sea salt, and ground cumin to the bowl with the diced tomatoes and onions. Stir thoroughly to evenly incorporate all components.

Step 05

Transfer the salsa into clean glass jars, pressing down to eliminate trapped air and ensure the vegetables are submerged under the juices. Leave approximately 2.5 cm of headspace. Seal jars loosely to allow gas to escape during fermentation.

Step 06

Place the jars in a dark, cool area away from direct heat for 3 to 5 days. Check daily for fermentation activity, evidenced by air bubbles. If necessary, gently push down the salsa with a fork to release air. Taste daily and refrigerate once the desired acidity is achieved.

Notes

  1. For tangier flavor, extend fermentation to five days, especially in cooler environments.
  2. Leaving jar lids slightly loose prevents pressure buildup and reduces the need to manually release gases.

Tools You'll Need

  • Large mixing bowl
  • Food processor
  • Glass jars with lids
  • Cutting board
  • Chef's knife

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 27
  • Total Fat: 0.2 g
  • Total Carbohydrate: 6 g
  • Protein: 1.2 g