High Protein Bagel Bites

Featured in: Perfect Bites for Every Occasion

Discover easy, high-protein bagel bites made with Greek yogurt, eggs, almond flour, and baking powder. Shape the dough, add cheese or pepperoni, and bake until golden. These savory bites are perfect for breakfast, snacks, or lunchboxes, offering a satisfying combination of softness and flavor. Enjoy them fresh from the oven or pack for on-the-go nourishment. This protein-packed twist on classic bagels gives you all the taste in a convenient bite-sized form, ready in under 30 minutes.

Tags: #halal #vegetarian #baked #north-american #snack #high-protein #gluten-free #easy #under-30-minutes

A woman is sitting at a table with a plate of food in front of her. The plate contains a dessert with berries on top.
Updated on Sun, 11 Jan 2026 23:00:00 GMT
A wooden cutting board holds a tray of delicious High Protein Bagel Bites. Pin it
A wooden cutting board holds a tray of delicious High Protein Bagel Bites. | recipebyme.com

These high protein bagel bites are my favorite answer to busy weekday cravings When I want the comfort of a classic bagel snack with a nutritional boost these little bites come together fast and satisfy every time Each one packs a punch of protein and can be personalized for any family snack time or breakfast spread

For me this recipe started as a quick-fix for my kids lunch boxes Now everyone asks for them before road trips or right after practice because they are so easy to make and even easier to grab on the go

Ingredients

  • Greek yogurt: supplies moisture plus protein and helps bind the dough Look for thick full fat Greek yogurt for best texture
  • Eggs: add richness flavor and even more protein Choose fresh eggs with deeply colored yolks for top quality
  • Baking powder: helps the bagel bites puff and develop a light crumb Fresh baking powder ensures maximum rise
  • Almond flour: creates a tender gluten free texture while bumping up the protein Use finely ground blanched almond flour for a smoother dough
  • Salt: is key for balancing flavors and should not be skipped Use fine sea salt for even seasoning
  • Optional toppings: like shredded cheese mini pepperoni or dried herbs take the flavor up a notch Always choose real cheese and the freshest herbs or cured meats you can find

Instructions

Prepare the Pan:
Line a baking sheet with parchment paper or coat a muffin tin with oil This prevents sticking and helps shape uniform bites
Mix the Dough:
Combine Greek yogurt eggs baking powder almond flour and salt in a large bowl Use a sturdy spatula to stir until the mixture becomes a thick sticky dough that pulls away from the bowl
Shape the Bagel Bites:
With damp hands pinch off small portions of dough Roll each into a ball then slightly flatten and poke a finger through the center to create the classic bagel shape If you want mini bagel bites simply skip the hole
Top and Arrange:
Sprinkle each bagel bite with your chosen toppings such as cheese pepperoni or herbs Press them gently into the dough to help them adhere and keep toppings from falling off during baking
Bake and Finish:
Slide the pan into a preheated oven Bake at three hundred seventy five degrees Fahrenheit for about fifteen to eighteen minutes until the tops are lightly golden and the bites feel firm to the touch
Cool and Enjoy:
Let the bagel bites cool on the pan for a few minutes before transferring to a rack This helps keep them tender inside Serve them warm for the best taste and texture
A wooden cutting board holds a dozen miniature biscuits, each with a sprinkle of cheese and herbs.
A wooden cutting board holds a dozen miniature biscuits, each with a sprinkle of cheese and herbs. | recipebyme.com

My favorite part is sneaking extra cheese onto half the batch so everyone ends up bickering over the cheesiest ones One Saturday morning we ate the whole tray in minutes and then spent the afternoon dreaming up even more creative topping combos

Storage Tips

Keep leftover bagel bites in an airtight container at room temperature for one day or refrigerated for up to three days To refresh just warm them in a toaster oven for a couple minutes If freezing let them cool fully before placing in a freezer bag Frozen bites reheat well in a hot oven straight from the freezer

Ingredient Substitutions

If you need a nut free version use oat flour instead of almond flour for a slightly different texture Other thick plain yogurts like skyr also work well Swap in your favorite grated cheese or try chopped olives or sun dried tomatoes for more variety

Serving Suggestions

Serve bagel bites with a bowl of marinara or whipped cream cheese for dipping They also work great as a protein boost in lunchboxes beside cut veggies and fruit For breakfast pile up with avocado slices or a sprinkle of everything bagel seasoning

Cultural Context

Mini bagels and bagel bites gained popularity as quick snacks and party food in the United States These home baked versions draw inspiration from New Yorks classic bagel shops but lean on modern ingredients to add nutrition and fit gluten free diets

Seasonal Adaptations

Add chopped roasted bell peppers or fresh basil in summer Top with caramelized onions and asiago cheese for a cold weather twist Sprinkle with pumpkin seeds or cinnamon in autumn for holiday flair

Success Stories

A friend made these for her post workout snack during half marathon training She loved how they kept her full without feeling overly heavy My nephew who is picky about texture also devoured three in a row and begged for the recipe

Freezer Meal Conversion

After baking let the bagel bites cool Fully freeze them on a baking sheet first so they do not stick together Then transfer to a freezer safe bag They stay fresh frozen for up to three months Pop them in a hot oven straight from the freezer for a quick snack

A wooden cutting board holds a variety of muffins, including a cheesy biscuit muffin.
A wooden cutting board holds a variety of muffins, including a cheesy biscuit muffin. | recipebyme.com

Give these bagel bites a try for easy snacking and healthy breakfasts They will quickly earn a spot among your family favorites

Recipe FAQs

→ What makes these bagel bites high in protein?

They use Greek yogurt and eggs, both rich in protein, plus almond flour for extra nutrients.

→ Can I use regular flour instead of almond flour?

Yes, but almond flour keeps the bites grain-free and boosts nutrition. Adjust texture as needed.

→ How should I serve these bagel bites?

Enjoy them warm as snacks, appetizers, or quick breakfast options. Add your favorite toppings for variety.

→ Can I prepare these in advance?

Yes, they store well in an airtight container. Reheat briefly for best texture when serving.

→ Are there topping variations?

Absolutely! Try shredded cheese, chopped herbs, or tiny slices of pepperoni for flavor twists.

High Protein Bagel Bites

Small bagel-style bites packed with protein from Greek yogurt and eggs, finished with your favorite savory toppings.

Prep Time
12 min
Cook Time
18 min
Total Time
30 min
By: Sana


Skill Level: Easy

Cuisine: American

Yield: 16 Servings (16 bagel bites)

Dietary Categories: Low-Carb, Vegetarian, Gluten-Free

Ingredients

→ Dough

01 1 cup Greek yogurt
02 2 large eggs
03 2 teaspoons baking powder
04 1 1/4 cups almond flour
05 1/2 teaspoon fine salt

→ Toppings

06 1/2 cup shredded cheese (optional)
07 1/4 cup mini pepperoni slices (optional)
08 1 tablespoon dried herbs (optional)

Steps

Step 01

Preheat oven to 375°F (190°C). Line a baking sheet or lightly grease a standard muffin tin.

Step 02

In a large bowl, thoroughly combine Greek yogurt, eggs, baking powder, almond flour, and salt until a thick dough forms.

Step 03

Divide dough evenly and roll into small balls, then gently flatten and shape each into miniature bagel rounds on the prepared pan.

Step 04

Sprinkle each dough bite with shredded cheese, mini pepperoni, and dried herbs as desired.

Step 05

Transfer pan to the oven and bake for 14–18 minutes until lightly golden and cooked through.

Step 06

Allow bagel bites to cool slightly before serving warm.

Notes

  1. For extra crunch, broil bagel bites for the final 2 minutes of baking.

Required Equipment

  • Mixing bowl
  • Baking sheet or muffin tin
  • Oven

Allergen Information

Check each ingredient for potential allergens and consult a healthcare professional if needed.
  • Contains eggs and dairy. Almond flour may pose a risk for individuals with nut allergies.

Nutritional Info (per serving)

This data is provided as a guide and doesn't replace medical advice.
  • Calories: 92
  • Fats: 5.7 g
  • Carbohydrates: 3.1 g
  • Proteins: 6.9 g